.. meta:: :description: rocSPARSE usage guide and documentation :keywords: rocSPARSE, ROCm, API, documentation, usage guide, device management, stream management, storage format, pointer mode .. _hipsparse-docs: ******************************************************************** Using hipSPARSE ******************************************************************** This topic discusses how to use hipSPARSE, including a discussion of device and stream management, storage formats, and pointer mode. HIP device management ===================== Before starting a HIP kernel, you can call :cpp:func:`hipSetDevice` to set a device. The system uses the default device if you don't call the function. Unless you explicitly call :cpp:func:`hipSetDevice` to specify another device, HIP kernels are always launched on device ``0``. This HIP (and CUDA) device management approach is not specific to the hipSPARSE library. hipSPARSE honors this approach and assumes you have already set the preferred device before a hipSPARSE routine call. After you set the device, you can create a handle with :ref:`hipsparse_create_handle_`. Subsequent hipSPARSE routines take this handle as an input parameter. hipSPARSE only queries the specified device (using :cpp:func:`hipGetDevice`). You are responsible for providing a valid device to hipSPARSE and ensuring device safety. If it's not a valid device, hipSPARSE returns an error message. To change to another device, you must destroy the current handle using :ref:`hipsparse_destroy_handle_`, then create another handle using :ref:`hipsparse_create_handle_`, specifying another device. .. note:: :cpp:func:`hipSetDevice` and :cpp:func:`hipGetDevice` are not part of the hipSPARSE API. They are part of the `HIP runtime API for device management `_. HIP stream management ===================== HIP kernels are always launched in a queue (also known as a stream). If you don't explicitly specify a stream, the system provides and maintains a default stream, which you cannot create or destroy. However, you can freely create new streams (using :cpp:func:`hipStreamCreate`) and bind them to the hipSPARSE handle using :ref:`hipsparse_set_stream_`. The hipSPARSE routines invoke HIP kernels. A hipSPARSE handle is always associated with a stream, which hipSPARSE passes to the kernels inside the routine. One hipSPARSE routine only takes one stream in a single invocation. If you create a stream, you are responsible for destroying it. See the `HIP stream management API `_ for more information. Asynchronous execution ====================== Except for functions that allocate memory themselves, preventing asynchronicity, all hipSPARSE library functions are non-blocking and execute asynchronously with respect to the host, unless otherwise stated. These functions might return before the actual computation has finished. To force synchronization, use either :cpp:func:`hipDeviceSynchronize` or :cpp:func:`hipStreamSynchronize`. This ensures that all previously executed hipSPARSE functions on the device or stream have been completed. Multiple streams and multiple devices ===================================== If a system has multiple HIP devices, you can run multiple hipSPARSE handles concurrently. However, you cannot run a single hipSPARSE handle on different discrete devices because each handle is associated with a particular device. A new handle must be created for each additional device. Interface examples ===================================== The hipSPARSE interface is compatible with the :doc:`rocSPARSE ` and NVIDIA CUDA cuSPARSE-v2 APIs. Porting a CUDA application that calls the CUDA cuSPARSE API to an application that calls the hipSPARSE API is relatively straightforward. For example, the hipSPARSE SCSRMV API interface is as follows: .. code-block:: cpp hipsparseStatus_t hipsparseScsrmv(hipsparseHandle_t handle, hipsparseOperation_t transA, int m, int n, int nnz, const float *alpha, const hipsparseMatDescr_t descrA, const float *csrValA, const int *csrRowPtrA, const int *csrColIndA, const float *x, const float *beta, float *y); hipSPARSE assumes matrix ``A`` and vectors ``x`` and ``y`` are allocated in the GPU memory space and filled with data. You are responsible for copying data to and from the host and device memory. Storage formats =============== This section describes the supported matrix storage formats. .. note:: The different storage formats support indexing with a base of 0 or 1, as described in :ref:`index_base`. COO storage format ------------------ The Coordinate (COO) storage format represents an :math:`m \times n` matrix by: =========== ================================================================== m Number of rows (integer). n Number of columns (integer). nnz Number of non-zero elements (integer). coo_val Array of ``nnz`` elements containing the data (floating point). coo_row_ind Array of ``nnz`` elements containing the row indices (integer). coo_col_ind Array of ``nnz`` elements containing the column indices (integer). =========== ================================================================== The COO matrix is expected to be sorted by row indices and column indices per row. Furthermore, each pair of indices should appear only once. Consider the following :math:`3 \times 5` matrix and the corresponding COO structures, with :math:`m = 3, n = 5` and :math:`\text{nnz} = 8` using zero-based indexing: .. math:: A = \begin{pmatrix} 1.0 & 2.0 & 0.0 & 3.0 & 0.0 \\ 0.0 & 4.0 & 5.0 & 0.0 & 0.0 \\ 6.0 & 0.0 & 0.0 & 7.0 & 8.0 \\ \end{pmatrix} where .. math:: \begin{array}{ll} \text{coo_val}[8] & = \{1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0\} \\ \text{coo_row_ind}[8] & = \{0, 0, 0, 1, 1, 2, 2, 2\} \\ \text{coo_col_ind}[8] & = \{0, 1, 3, 1, 2, 0, 3, 4\} \end{array} COO (AoS) storage format ------------------------ The Coordinate (COO) Array of Structure (AoS) storage format represents an :math:`m \times n` matrix by: ======= ========================================================================================== m Number of rows (integer). n Number of columns (integer). nnz Number of non-zero elements (integer). coo_val Array of ``nnz`` elements containing the data (floating point). coo_ind Array of ``2 * nnz`` elements containing alternating row and column indices (integer). ======= ========================================================================================== The COO (AoS) matrix is expected to be sorted by row indices and column indices per row. Furthermore, each pair of indices should appear only once. Consider the following :math:`3 \times 5` matrix and the corresponding COO (AoS) structures, with :math:`m = 3, n = 5` and :math:`\text{nnz} = 8` using zero-based indexing: .. math:: A = \begin{pmatrix} 1.0 & 2.0 & 0.0 & 3.0 & 0.0 \\ 0.0 & 4.0 & 5.0 & 0.0 & 0.0 \\ 6.0 & 0.0 & 0.0 & 7.0 & 8.0 \\ \end{pmatrix} where .. math:: \begin{array}{ll} \text{coo_val}[8] & = \{1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0\} \\ \text{coo_ind}[16] & = \{0, 0, 0, 1, 0, 3, 1, 1, 1, 2, 2, 0, 2, 3, 2, 4\} \\ \end{array} CSR storage format ------------------ The Compressed Sparse Row (CSR) storage format represents an :math:`m \times n` matrix by: =========== ========================================================================= m Number of rows (integer). n Number of columns (integer). nnz Number of non-zero elements (integer). csr_val Array of ``nnz`` elements containing the data (floating point). csr_row_ptr Array of ``m+1`` elements that point to the start of every row (integer). csr_col_ind Array of ``nnz`` elements containing the column indices (integer). =========== ========================================================================= The CSR matrix is expected to be sorted by column indices within each row. Furthermore, each pair of indices should appear only once. Consider the following :math:`3 \times 5` matrix and the corresponding CSR structures, with :math:`m = 3, n = 5` and :math:`\text{nnz} = 8` using one-based indexing: .. math:: A = \begin{pmatrix} 1.0 & 2.0 & 0.0 & 3.0 & 0.0 \\ 0.0 & 4.0 & 5.0 & 0.0 & 0.0 \\ 6.0 & 0.0 & 0.0 & 7.0 & 8.0 \\ \end{pmatrix} where .. math:: \begin{array}{ll} \text{csr_val}[8] & = \{1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0\} \\ \text{csr_row_ptr}[4] & = \{1, 4, 6, 9\} \\ \text{csr_col_ind}[8] & = \{1, 2, 4, 2, 3, 1, 4, 5\} \end{array} CSC storage format ------------------ The Compressed Sparse Column (CSC) storage format represents an :math:`m \times n` matrix by: =========== ========================================================================= m Number of rows (integer). n Number of columns (integer). nnz Number of non-zero elements (integer). csc_val Array of ``nnz`` elements containing the data (floating point). csc_col_ptr Array of ``n+1`` elements that point to the start of every column (integer). csc_row_ind Array of ``nnz`` elements containing the row indices (integer). =========== ========================================================================= The CSC matrix is expected to be sorted by row indices within each column. Furthermore, each pair of indices should appear only once. Consider the following :math:`3 \times 5` matrix and the corresponding CSC structures, with :math:`m = 3, n = 5` and :math:`\text{nnz} = 8` using one-based indexing: .. math:: A = \begin{pmatrix} 1.0 & 2.0 & 0.0 & 3.0 & 0.0 \\ 0.0 & 4.0 & 5.0 & 0.0 & 0.0 \\ 6.0 & 0.0 & 0.0 & 7.0 & 8.0 \\ \end{pmatrix} where .. math:: \begin{array}{ll} \text{csc_val}[8] & = \{1.0, 6.0, 2.0, 4.0, 5.0, 3.0, 7.0, 8.0\} \\ \text{csc_col_ptr}[6] & = \{1, 3, 5, 6, 8, 9\} \\ \text{csc_row_ind}[8] & = \{1, 3, 1, 2, 2, 1, 3, 3\} \end{array} BSR storage format ------------------ The Block Compressed Sparse Row (BSR) storage format represents an :math:`(mb \cdot \text{bsr_dim}) \times (nb \cdot \text{bsr_dim})` matrix by: =========== ============================================================================================================================================== mb Number of block rows (integer). nb Number of block columns (integer). nnzb Number of non-zero blocks (integer). bsr_val Array of ``nnzb * bsr_dim * bsr_dim`` elements containing the data (floating point). Blocks can be stored in column-major or row-major format. bsr_row_ptr Array of ``mb+1`` elements that point to the start of every block row (integer). bsr_col_ind Array of ``nnzb`` elements containing the block column indices (integer). bsr_dim Dimension of each block (integer). =========== ============================================================================================================================================== The BSR matrix is sorted by column indices within each row. This matrix is defined as having a number of rows equivalent to :math:`\text{block_dim} \times \text{number_of_row_blocks}`. Consider the following :math:`4 \times 3` matrix and the corresponding BSR structures, with :math:`\text{bsr_dim} = 2, mb = 2, nb = 2` and :math:`\text{nnzb} = 4` using zero-based indexing and column-major storage: .. math:: A = \begin{pmatrix} 1.0 & 0.0 & 2.0 \\ 3.0 & 0.0 & 4.0 \\ 5.0 & 6.0 & 0.0 \\ 7.0 & 0.0 & 8.0 \\ \end{pmatrix} with the blocks :math:`A_{ij}` .. math:: A_{00} = \begin{pmatrix} 1.0 & 0.0 \\ 3.0 & 0.0 \\ \end{pmatrix}, A_{01} = \begin{pmatrix} 2.0 & 0.0 \\ 4.0 & 0.0 \\ \end{pmatrix}, A_{10} = \begin{pmatrix} 5.0 & 6.0 \\ 7.0 & 0.0 \\ \end{pmatrix}, A_{11} = \begin{pmatrix} 0.0 & 0.0 \\ 8.0 & 0.0 \\ \end{pmatrix} such that .. math:: A = \begin{pmatrix} A_{00} & A_{01} \\ A_{10} & A_{11} \\ \end{pmatrix} with arrays represented as .. math:: \begin{array}{ll} \text{bsr_val}[16] & = \{1.0, 3.0, 0.0, 0.0, 2.0, 4.0, 0.0, 0.0, 5.0, 7.0, 6.0, 0.0, 0.0, 8.0, 0.0, 0.0\} \\ \text{bsr_row_ptr}[3] & = \{0, 2, 4\} \\ \text{bsr_col_ind}[4] & = \{0, 1, 0, 1\} \end{array} GEBSR storage format -------------------- The General Block Compressed Sparse Row (GEBSR) storage format represents an :math:`(mb \cdot \text{bsr_row_dim}) \times (nb \cdot \text{bsr_col_dim})` matrix by: =========== ====================================================================================================================================================== mb Number of block rows (integer). nb Number of block columns (integer). nnzb Number of non-zero blocks (integer). bsr_val Array of ``nnzb * bsr_row_dim * bsr_col_dim`` elements containing the data (floating point). Blocks can be stored in column-major or row-major format. bsr_row_ptr Array of ``mb+1`` elements that point to the start of every block row (integer). bsr_col_ind Array of ``nnzb`` elements containing the block column indices (integer). bsr_row_dim Row dimension of each block (integer). bsr_col_dim Column dimension of each block (integer). =========== ====================================================================================================================================================== The GEBSR matrix is expected to be sorted by column indices within each row. If :math:`m` is not evenly divisible by the row block dimension or :math:`n` is not evenly divisible by the column block dimension, then zeros are padded to the matrix, such that :math:`mb = (m + \text{bsr_row_dim} - 1) / \text{bsr_row_dim}` and :math:`nb = (n + \text{bsr_col_dim} - 1) / \text{bsr_col_dim}`. Consider the following :math:`4 \times 5` matrix and the corresponding GEBSR structures, with :math:`\text{bsr_row_dim} = 2`, :math:`\text{bsr_col_dim} = 3`, :math:`mb = 2`, :math:`nb = 2`, and :math:`\text{nnzb} = 4` using zero-based indexing and column-major storage: .. math:: A = \begin{pmatrix} 1.0 & 0.0 & 0.0 & 2.0 & 0.0 \\ 3.0 & 0.0 & 4.0 & 0.0 & 0.0 \\ 5.0 & 6.0 & 0.0 & 7.0 & 0.0 \\ 0.0 & 0.0 & 8.0 & 0.0 & 9.0 \\ \end{pmatrix} with the blocks :math:`A_{ij}` .. math:: A_{00} = \begin{pmatrix} 1.0 & 0.0 & 0.0 \\ 3.0 & 0.0 & 4.0 \\ \end{pmatrix}, A_{01} = \begin{pmatrix} 2.0 & 0.0 & 0.0 \\ 0.0 & 0.0 & 0.0 \\ \end{pmatrix}, A_{10} = \begin{pmatrix} 5.0 & 6.0 & 0.0 \\ 0.0 & 0.0 & 8.0 \\ \end{pmatrix}, A_{11} = \begin{pmatrix} 7.0 & 0.0 & 0.0 \\ 0.0 & 9.0 & 0.0 \\ \end{pmatrix} such that .. math:: A = \begin{pmatrix} A_{00} & A_{01} \\ A_{10} & A_{11} \\ \end{pmatrix} with arrays represented as .. math:: \begin{array}{ll} \text{bsr_val}[24] & = \{1.0, 3.0, 0.0, 0.0, 0.0, 4.0, 2.0, 0.0, 0.0, 0.0, 0.0, 0.0, 5.0, 0.0, 6.0, 0.0, 0.0, 8.0, 7.0, 0.0, 0.0, 9.0, 0.0, 0.0\} \\ \text{bsr_row_ptr}[3] & = \{0, 2, 4\} \\ \text{bsr_col_ind}[4] & = \{0, 1, 0, 1\} \end{array} ELL storage format ------------------ The Ellpack-Itpack (ELL) storage format represents an :math:`m \times n` matrix by: =========== ================================================================================ m Number of rows (integer). n Number of columns (integer). ell_width Maximum number of non-zero elements per row (integer) ell_val Array of ``m * ell_width`` elements containing the data (floating point). ell_col_ind Array of ``m * ell_width`` elements containing the column indices (integer). =========== ================================================================================ The ELL matrix is assumed to be stored in column-major format. Rows with less than ``ell_width`` non-zero elements are padded with zeros (``ell_val``) and :math:`-1` (``ell_col_ind``). Consider the following :math:`3 \times 5` matrix and the corresponding ELL structures, with :math:`m = 3, n = 5`, and :math:`\text{ell_width} = 3` using zero-based indexing: .. math:: A = \begin{pmatrix} 1.0 & 2.0 & 0.0 & 3.0 & 0.0 \\ 0.0 & 4.0 & 5.0 & 0.0 & 0.0 \\ 6.0 & 0.0 & 0.0 & 7.0 & 8.0 \\ \end{pmatrix} where .. math:: \begin{array}{ll} \text{ell_val}[9] & = \{1.0, 4.0, 6.0, 2.0, 5.0, 7.0, 3.0, 0.0, 8.0\} \\ \text{ell_col_ind}[9] & = \{0, 1, 0, 1, 2, 3, 3, -1, 4\} \end{array} .. _HYB storage format: HYB storage format ------------------ The Hybrid (HYB) storage format represents an :math:`m \times n` matrix by: =========== ========================================================================================= m Number of rows (integer). n Number of columns (integer). nnz Number of non-zero elements of the COO part (integer). ell_width Maximum number of non-zero elements per row of the ELL part (integer). ell_val Array of ``m * ell_width`` elements containing the data for the ELL part (floating point). ell_col_ind Array of ``m * ell_width`` elements containing the column indices for the ELL part (integer). coo_val Array of ``nnz`` elements containing the data for the COO part (floating point). coo_row_ind Array of ``nnz`` elements containing the row indices for the COO part (integer). coo_col_ind Array of ``nnz`` elements containing the column indices for the COO part (integer). =========== ========================================================================================= The HYB format is a combination of the ELL and COO sparse matrix formats. Typically, the regular part of the matrix is stored in ELL storage format, and the irregular part of the matrix is stored in COO storage format. Three different partitioning schemes can be applied when converting a CSR matrix to a matrix in HYB storage format. For further details on the partitioning schemes, see :ref:`rocsparse_hyb_partition_`. .. _index_base: Storage schemes and indexing base ================================= hipSPARSE supports 0-based and 1-based indexing. The index base is selected by the :cpp:enum:`hipsparseIndexBase_t` type, which is either passed as a standalone parameter or as part of the :cpp:type:`hipsparseMatDescr_t` type. Dense vectors are represented with a 1D array, stored linearly in memory. Sparse vectors are represented by a 1D data array stored linearly in memory that holds all non-zero elements and a 1D indexing array stored linearly in memory that holds the positions of the corresponding non-zero elements. Pointer mode ============ The auxiliary functions :cpp:func:`hipsparseSetPointerMode` and :cpp:func:`hipsparseGetPointerMode` are used to set and get the value of the state variable :cpp:enum:`hipsparsePointerMode_t`. If :cpp:enum:`hipsparsePointerMode_t` is equal to :cpp:enumerator:`HIPSPARSE_POINTER_MODE_HOST`, then scalar parameters must be allocated on the host. If :cpp:enum:`hipsparsePointerMode_t` is equal to :cpp:enumerator:`HIPSPARSE_POINTER_MODE_DEVICE`, then scalar parameters must be allocated on the device. There are two types of scalar parameter: #. Scaling parameters, such as ``alpha`` and ``beta``, that are used, for example, in :cpp:func:`hipsparseScsrmv` and :cpp:func:`hipsparseSbsrmv` #. Scalar results from functions such as :cpp:func:`hipsparseSdoti` or :cpp:func:`hipsparseCdotci` For scalar parameters such as ``alpha`` and ``beta``, memory can be allocated on the host heap or stack when :cpp:enum:`hipsparsePointerMode_t` is equal to :cpp:enumerator:`HIPSPARSE_POINTER_MODE_HOST`. The kernel launch is asynchronous, and if the scalar parameter is on the heap, it can be freed after the return from the kernel launch. When :cpp:enum:`hipsparsePointerMode_t` is equal to :cpp:enumerator:`HIPSPARSE_POINTER_MODE_DEVICE`, the scalar parameter must not be changed until the kernel completes. For scalar results, when :cpp:enum:`hipsparsePointerMode_t` is equal to :cpp:enumerator:`HIPSPARSE_POINTER_MODE_HOST`, the function blocks the CPU until the GPU has copied the result back to the host. When :cpp:enum:`hipsparsePointerMode_t` is equal to :cpp:enumerator:`HIPSPARSE_POINTER_MODE_DEVICE`, the function returns after the asynchronous launch. Similar to the vector and matrix results, the scalar result is only available when the kernel has completed execution.